PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN22880.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 305aa    MW: 34317.9 Da    PI: 4.6375
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN22880.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.3e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd +l+ +v+++G+ +W+  +r  g+ R++k+c++rw +yl
       KHN22880.1 14 KGTWTPEEDRKLIAYVTRYGSWNWRQLPRFAGLARCGKSCRLRWMNYL 61
                     799*******************************************97 PP

2Myb_DNA-binding58.61.4e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T++Ede +++ +k+lG++ W++Ia++++ gRt++++k++w++ 
       KHN22880.1  67 RGNFTQQEDECIIRMHKKLGNK-WSAIAAELP-GRTDNEIKNHWHTT 111
                      89********************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.383961IPR017930Myb domain
SuperFamilySSF466896.91E-3012108IPR009057Homeodomain-like
SMARTSM007179.6E-111363IPR001005SANT/Myb domain
PfamPF002495.4E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-231568IPR009057Homeodomain-like
CDDcd001671.65E-91661No hitNo description
PROSITE profilePS5129426.562116IPR017930Myb domain
SMARTSM007172.1E-1766114IPR001005SANT/Myb domain
PfamPF002491.4E-1667111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-2669114IPR009057Homeodomain-like
CDDcd001672.86E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MVRTPSCDKS GTRKGTWTPE EDRKLIAYVT RYGSWNWRQL PRFAGLARCG KSCRLRWMNY  60
LRPNVKRGNF TQQEDECIIR MHKKLGNKWS AIAAELPGRT DNEIKNHWHT TLKKWSQQNA  120
ITNEEARTSK SKDKVPNKGV TVTLPANSSL MSDNSSSSPV SSTCSEFSSI TSDNSTAASM  180
ENLVFEDDDF GFLDSYNESF WTELNLDDIS FDAPCEMDLG DTNVSFESTS CSNSNTLDSL  240
HGSTSESIVV DNDFGGFLDA YTKAAVDNFW TQPYVADMSH VPSELLVPSM AESEYFTPIY  300
DDLWG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-29141147106B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150397e-47AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540870.10.0PREDICTED: myb-related protein Myb4 isoform X1
TrEMBLA0A0B2QN340.0A0A0B2QN34_GLYSO; Myb-related protein Myb4
TrEMBLI1LRW10.0I1LRW1_SOYBN; Uncharacterized protein
STRINGGLYMA12G11390.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-56myb domain protein 14
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]